bugGChemPaint - Bugs: bug #20468, Crashes when opening CDXML files...

 
 

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bug #20468: Crashes when opening CDXML files made by GChempaint

Submitted by:  Takashi Suyama <tak1150>
Submitted on:  Thu 12 Jul 2007 05:44:06 PM UTC  
 
Category: NoneSeverity: 4 - Important
Item Group: NoneStatus: Fixed
Privacy: PublicAssigned to: Jean Bréfort <jean_brefort>
Open/Closed: Closed

Fri 27 Jul 2007 03:33:33 PM UTC, comment #5:

closed after 0.8.2 release

Jean Bréfort <jean_brefort>
Project AdministratorIn charge of this item.
Fri 13 Jul 2007 08:38:22 PM UTC, comment #4:

Great! Thanks for your work. As soon as I try opening ChemDraw files in 0.8.2 version and find anything (good or bad), I'll post here. Thanks.

Takashi Suyama <tak1150>
Fri 13 Jul 2007 07:58:38 PM UTC, comment #3:

Crash fixed in HEAD and 0.8. There were actually three related bugs.
If you have CDX or CDXML files not correctly opened by GChemPaint, please submit them, either here or to the OpenBabel project (I'm working on both formats in OpenBabel, but can't make samples as I have no access to ChemDraw).

Jean Bréfort <jean_brefort>
Project AdministratorIn charge of this item.
Thu 12 Jul 2007 07:44:33 PM UTC, comment #2:

Seems you have openbabel-2.1.0 for which the CDXML export is broken (the file does not contain any atom or bond). You should upgrade to 2.1.1.
I'll fix the crash, which is another issue.

Jean Bréfort <jean_brefort>
Project AdministratorIn charge of this item.
Thu 12 Jul 2007 06:07:47 PM UTC, comment #1:

Thanks for reporting

Jean Bréfort <jean_brefort>
Project AdministratorIn charge of this item.
Thu 12 Jul 2007 05:44:06 PM UTC, original submission:

GChempaint crashes when opening ChemDraw files (CDXML) that were created by GChempaint.

These files could not be opened by ChemDraw (v.9) either.

some ChemDraw-generated CDX files can be opened almost correctly by GChempaint (0.8.0) but not some of the other ones.

I posted a sample file (CDXML) made by Gchempaint.

Takashi Suyama <tak1150>

 

Attached Files
file #13311:  epiquinamide.cdxml added by tak1150 (149B - chemical/x-cdxml)

 

Depends on the following items: None found

Items that depend on this one: None found

 

Carbon-Copy List
  • -unavailable- added by jean_brefort (Posted a comment)
  • -unavailable- added by tak1150 (Submitted the item)
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    Follow 6 latest changes.

    Date Changed By Updated Field Previous Value => Replaced By
    Fri 27 Jul 2007 03:33:33 PM UTCjean_brefortOpen/ClosedOpen=>Closed
    Fri 13 Jul 2007 07:58:38 PM UTCjean_brefortStatusConfirmed=>Fixed
    Thu 12 Jul 2007 06:07:47 PM UTCjean_brefortSeverity3 - Normal=>4 - Important
      StatusNone=>Confirmed
      Assigned toNone=>jean_brefort
    Thu 12 Jul 2007 05:44:06 PM UTCtak1150Attached File-=>Added epiquinamide.cdxml, #13311

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