bugBKChem - Bugs: bug #22259, bkchem freezes when importing a...

 
 

bug #22259: bkchem freezes when importing a CML2 file

Submitted by:  None
Submitted on:  Fri 08 Feb 2008 08:43:55 PM UTC  
 
Category: NoneSeverity: 3 - Normal
Item Group: importStatus: Fixed
Privacy: PublicAssigned to: Beda Kosata <beda>
Open/Closed: Closed

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Wed 13 Feb 2008 07:47:29 PM UTC, comment #1:

The problem here is that the heme molecule described in the CML file is not connected - the atom of iron is not connected to the rest of the structure. This is what makes this file special.
I am already hunting cases of import plugins that do not properly handle disconnected molecules, so I have fixed this one as well.
The fix will be included in the next release.
Thanks for the bugreport.

Beda Kosata <beda>
Project AdministratorIn charge of this item.
Fri 08 Feb 2008 08:43:55 PM UTC, original submission:

When I import (File ... Import ... CML2) the attached file (generated by openbabel), the bkchem GUI freezes - no buttons work, etc.

I'm using fedora 8. The CML2 import works fine w/other files so it seems to be something unique to this one.

Anonymous

 

(Note: upload size limit is set to 16384 kB, after insertion of the required escape characters.)

Attach File(s):
   
   
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Attached Files
file #15000:  heme.cml added by None (8KiB - application/octet-stream)

 

Depends on the following items: None found

Items that depend on this one: None found

 

Carbon-Copy List
  • -unavailable- added by beda (Updated the item)
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    Follow 5 latest changes.

    Date Changed By Updated Field Previous Value => Replaced By
    Wed 13 Feb 2008 07:47:29 PM UTCbedaStatusIn Progress=>Fixed
      Open/ClosedOpen=>Closed
    Wed 13 Feb 2008 03:10:19 PM UTCbedaStatusNone=>In Progress
      Assigned toNone=>beda
    Fri 08 Feb 2008 08:43:55 PM UTCNoneAttached File-=>Added heme.cml, #15000

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