Maneage - Tasks: task #15772, R (r-cran) packages in Maneage
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task #15772: R (r-cran) packages in Maneage
Submitter: | Boud Roukema <boud> | ||
Submitted: | Fri 11 Sep 2020 12:56:07 AM UTC | ||
Should Start On: | Thu 10 Sep 2020 12:00:00 AM UTC | Should be Finished on: | Thu 10 Sep 2020 12:00:00 AM UTC |
Category: | Software | Priority: | 5 - Normal |
Status: | Done | Privacy: | Public |
Assigned to: | boud | Percent Complete: | 100% |
Open/Closed: | Closed | Effort: | 0.00 |
Jump to the original submission
Tue 04 Jan 2022 04:43:35 PM UTC, comment #20: |
Mohammad Akhlaghi <makhlaghi> |
Tue 04 Jan 2022 04:39:56 PM UTC, comment #19: Your fix looks correct to me. I like Section 3.1 of the paper:
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Boud Roukema <boud> |
Tue 04 Jan 2022 01:34:23 AM UTC, comment #18: Thanks Boud, the citation entry has been merged. But after trying it, I noticed that the DOI link (https://doi.org/10.2307/1390807) linked to JSTOR, not the main journal. So after searching, I found the journal DOI: https://doi.org/10.1080/10618600.1996.10474713 . The updated citation is done in Commit 7bb37e586.
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Mohammad Akhlaghi <makhlaghi> |
Mon 03 Jan 2022 08:41:53 PM UTC, comment #17:
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Boud Roukema <boud> |
Mon 03 Jan 2022 07:30:47 PM UTC, comment #16: Thanks a lot for the nice hack Boud! I am happy this problem was found early and fixed :-). I have merged it into 'version-update'.
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Mohammad Akhlaghi <makhlaghi> |
Mon 03 Jan 2022 02:46:03 PM UTC, comment #15:
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Boud Roukema <boud> |
Mon 03 Jan 2022 02:26:25 PM UTC, comment #14:
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Boud Roukema <boud> |
Sun 02 Jan 2022 11:14:40 PM UTC, comment #13: By the way, can you please also make sure if any of the R packages come with a paper to cite? |
Mohammad Akhlaghi <makhlaghi> |
Sun 02 Jan 2022 11:12:20 PM UTC, comment #12: For example, where you using Maneage's GCC or your host GCC? |
Mohammad Akhlaghi <makhlaghi> |
Sun 02 Jan 2022 11:06:40 PM UTC, comment #11: Thanks for the check Boud!
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Mohammad Akhlaghi <makhlaghi> |
Sun 02 Jan 2022 11:47:14 AM UTC, comment #10: In principle, all those changes look OK. :) In practice, however...
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Boud Roukema <boud> |
Sun 02 Jan 2022 04:34:07 AM UTC, comment #9: Thanks a lot Boud!
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Mohammad Akhlaghi <makhlaghi> |
Sat 01 Jan 2022 11:54:45 PM UTC, comment #8: Commit 64437d76 (branched directly off 0b6e88dc in the "R" branch) has two minor fixes and removes the old rule for R. This fully works for me (including producing the pdf), and with
enabled 'configures' the libraries fully.
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Boud Roukema <boud> |
Sat 01 Jan 2022 04:07:10 PM UTC, comment #7: Thanks Boud, I just committed it over the rebased branch (as Commit 0b6e88dc).
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Mohammad Akhlaghi <makhlaghi> |
Sat 01 Jan 2022 12:06:15 PM UTC, comment #6: You're right that 'r-cran.mk' was forgotten! It's here:
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Boud Roukema <boud> |
Sat 01 Jan 2022 04:16:09 AM UTC, comment #5: Thanks for all the great work on this Boud!
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Mohammad Akhlaghi <makhlaghi> |
Tue 12 Oct 2021 09:22:05 PM UTC, comment #4: I've added the text 'r-cran' in the title of this task to make it easier to find using searches on strings.
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Boud Roukema <boud> |
Fri 01 Oct 2021 02:25:24 PM UTC, comment #3: Please ignore https://gitlab.com/maneage/project-dev/-/merge_requests/5 and instead use this updated commit:
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Boud Roukema <boud> |
Mon 21 Jun 2021 11:47:10 PM UTC, comment #2: I more or less followed the 11 Sep 2020 guideline.
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Boud Roukema <boud> |
Fri 11 Sep 2020 06:30:15 PM UTC, comment #1: When you added the 'R CMD INSTALL ...' command, did it download all the dependencies as binary from the internet? The "make line" is a little ambiguous, did you add a full new Make rule (with a separate target for this package), or just added in the same rule that R is built.
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Mohammad Akhlaghi <makhlaghi> |
Fri 11 Sep 2020 12:56:07 AM UTC, original submission:
Does anyone currently have a maneage subsystem for installing R (R-project) extension packages?
in a 'make' line in high-level.mk works fine for me for individual packages, but we really should have a system equivalent to that of the python system.
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Boud Roukema <boud> |
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Follow 17 latest changes.
Date | Changed by | Updated Field | Previous Value | => | Replaced by |
---|---|---|---|---|---|
2022-01-04 | makhlaghi | Open/Closed | Open | Closed | |
2022-01-04 | makhlaghi | Status | In Progress | Done | |
Percent Complete | 80% | 100% | |||
2022-01-04 | boud | Percent Complete | 90% | 80% | |
2022-01-04 | makhlaghi | Percent Complete | 80% | 90% | |
2022-01-02 | boud | Status | Done | In Progress | |
Percent Complete | 100% | 80% | |||
2022-01-02 | makhlaghi | Status | In Progress | Done | |
Percent Complete | 80% | 100% | |||
2022-01-01 | makhlaghi | Category | None | Software | |
Status | None | In Progress | |||
Percent Complete | 0% | 80% | |||
Assigned to | None | boud | |||
2021-10-12 | boud | Summary | R packages in Maneage | R (r-cran) packages in Maneage | |
2021-06-22 | boud | Should be Finished on | 2021-12-31 | 2020-09-10 | |
2021-06-22 | boud | Should be Finished on | 2020-09-10 | 2021-12-31 | |
2020-09-11 | makhlaghi | Summary | R-project / R-base | R packages in Maneage |
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Corresponding source code
Thanks for the confirmation, then I am closing this task. We can discuss adding more R packages during the regular software updates (with other software packages) and of course, fix any bugs that we find as bugs.
Thanks also for the interesting quote: that was an impressive prediction! I should also have a look at it ;-)!