taskSavannah Administration - Tasks: task #13010, Submission of Cameron Palmer

 
 

task #13010: Submission of Cameron Palmer

Submitter:  Cameron Palmer <cdpalmer>
Submitted:  Mon 23 Dec 2013 04:14:54 PM UTC
   
 
Should Start On:  Mon 23 Dec 2013 12:00:00 AM UTC Should be Finished on:  Thu 02 Jan 2014 12:00:00 AM UTC
Category:  Project Approval Priority:  * 5 - Normal
Status:  Done Privacy:  Public
Assigned to:  alip2890 Open/Closed:  Closed
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Sat 28 Dec 2013 05:29:08 PM UTC, comment #3: 

Hi,

I have approved the project.  You will receive an automated message with details about the approval.

Best regards.

Aljosha Papsch <alip2890>
Sat 28 Dec 2013 05:12:17 PM UTC, comment #2: 

Hi, thanks for catching that, you're right on all counts.  I've updated the licensing for automake/autoconf (attached for your perusal).  Indeed, the project name should be "genezip," sorry for the trouble!

Thanks again.  Looking forward to it going live.

(file #30123)

Cameron Palmer <cdpalmer>
Fri 27 Dec 2013 07:50:13 PM UTC, comment #1: 

Hi,

thanks for submitting your project to Savannah!  I evaluated your submission.

There is an issue in configure.ac and Makefile.am; both need a copyright and license notice.  Please add the notices before uploading anything to the Savannah servers.

I would approve your project, however I noticed that you chose "cdpalmer" for the system name (the project name) while the tarball says "genezip".  If that was a mistake, I can correct it but it has to be done before activation.  I will wait with activation until tomorrow to give you some time.

Happy hacking!

Aljosha Papsch <alip2890>
Mon 23 Dec 2013 04:14:54 PM UTC, original submission:  

A new project has been registered at Savannah
This project account will remain inactive until a site admin approves or discards the registration.


Registration Administration


While this item will be useful to track the registration process, approving or discarding the registration must be done using the specific Group Administration page, accessible only to site administrators, effectively logged as site administrators (superuser):



Registration Details


  • Name: Cameron Palmer
  • System Name:  cdpalmer
  • Type: non-GNU software and documentation
  • License: GNU General Public License v3 or later





Description:

This project is a bioinformatics library for in-RAM compression of probabilistic genotypes.  Increasing numbers of application need to store billions of floating precision values in RAM simultaneously for combinatorial statistics.  Standard storage methods are not compatible with reasonable RAM restrictions on most computers.  This library adapts the DEFLATE algorithm to operate on probabilities with fixed precision, rather than ASCII characters.  Pattern matching is implemented with a custom suffix tree algorithm with lazy updating for a sliding window search region.  It provides OO access to stored probabilities suitable for bioinformatics applications.  The project is implemented in C++ (with limited, wrapped traditional C).


Other Software Required:

Optional dependency on zlib: http://www.zlib.net.  License is apparently custom to project, though compatible with GPL.  Otherwise, the project exclusively uses GCC/std namespace.


Other Comments:

This is a candidate initial release for the library.  We're looking to post this library here so others can come into the project and help, as we publish the contents of the library in our field.  As this is my first project here, I apologize for any problems with the distribution.  Any feedback you can provide, whether or not the project is approved, would be much appreciated.


Tarball URL:

http://savannah.gnu.org/submissions_uploads/genezip-1.0.tar.gz


Cameron Palmer <cdpalmer>

 

(Note: upload size limit is set to 16384 kB, after insertion of the required escape characters.)

Attach Files:
   
   
Comment:
   

Attached Files
file #30123:  genezip-1.0.tar.gz added by cdpalmer (397KiB - application/gzip)

 

Depends on the following items: None found

Items that depend on this one: None found

 

Carbon-Copy List
  • -email is unavailable- added by alip2890 (Posted a comment)
  • -email is unavailable- added by cdpalmer (Submitted the item)
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    Follow 7 latest changes.

    Date Changed by Updated Field Previous Value => Replaced by
    2013-12-28 alip2890 StatusIn Progress Done
        Percent Complete70% 100%
        Open/ClosedOpen Closed
    2013-12-28 cdpalmer Attached File- Added genezip-1.0.tar.gz, #30123
    2013-12-27 alip2890 StatusNone In Progress
        Percent Complete0% 70%
        Assigned toNone alip2890

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