bugManeage - Bugs: bug #58655, ATLAS/LAPACK on macOS fails in...

 
 

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bug #58655: ATLAS/LAPACK on macOS fails in final install/clean stage

Submitter:  Mohammad Akhlaghi <makhlaghi>
Submitted:  Fri 26 Jun 2020 12:57:46 AM UTC
   
 
Category:  None Severity:  3 - Normal
Item Group:  Crash Status:  Fixed
Privacy:  Public Assigned to:  None
Open/Closed:  Closed

Sat 27 Jun 2020 12:05:27 AM UTC, comment #2: 

In Comment 16 of Task 15686 Raul confirmed that this bug didn't actually exist at all! The ATLAS library was actually installed on macOS and these ignored errors were actually part of the build process (for different scenarios! a bad design choice!).

Mohammad Akhlaghi <makhlaghi>
Group administrator
Fri 26 Jun 2020 01:03:26 AM UTC, comment #1: 

After the previous post I noticed that after all the errors in 'cp' and 'chmod', there is an "(ignored)" statement. So these errors haven't caused the final crash.

Raul, can you please look into the previous outputs, probably the main error is somewhere above this part.

Mohammad Akhlaghi <makhlaghi>
Group administrator
Fri 26 Jun 2020 12:57:46 AM UTC, original submission:  

When building ATLAS/LAPACK on macOS, we get the following error (almost at the end):


ATLAS install complete.  Examine
ATLAS/bin/<arch>/INSTALL_LOG/SUMMARY.LOG for details.
make[2]: Leaving directory '/BDIR/software/build-tmp/ATLAS/build'
make clean
make[2]: Entering directory '/BDIR/software/build-tmp/ATLAS/build'
rm -rf *.dSYM
rm -f *.o x* config?.out *core*
make[2]: Leaving directory '/BDIR/software/build-tmp/ATLAS/build'
make[1]: Leaving directory '/BDIR/software/build-tmp/ATLAS/build'
make[1]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[1]: Entering directory '/BDIR/software/build-tmp/ATLAS/build'
mkdir -p /BDIR/software/installed/include/atlas
chmod 0755 /BDIR/software/installed/include/atlas
make -f Make.top install_inc INSTdir=/BDIR/software/installed/include
make[2]: Entering directory '/BDIR/software/build-tmp/ATLAS/build'
cp /BDIR/software/build-tmp/ATLAS/build/..//include/cblas.h /BDIR/software/installed/include/.
cp /BDIR/software/build-tmp/ATLAS/build/..//include/clapack.h /BDIR/software/installed/include/.
chmod 0644 /BDIR/software/installed/include/cblas.h /BDIR/software/installed/include/clapack.h
cp /BDIR/software/build-tmp/ATLAS/build/include/* /BDIR/software/installed/include/atlas/.
chmod 0644 /BDIR/software/installed/include/atlas/*
make[2]: Leaving directory '/BDIR/software/build-tmp/ATLAS/build'
make -f Make.top install_lib INSTdir=/BDIR/software/installed/lib
make[2]: Entering directory '/BDIR/software/build-tmp/ATLAS/build'
cp /BDIR/software/build-tmp/ATLAS/build/lib/libatlas.a /BDIR/software/installed/lib/.
cp /BDIR/software/build-tmp/ATLAS/build/lib/libcblas.a /BDIR/software/installed/lib/.
cp /BDIR/software/build-tmp/ATLAS/build/lib/liblapack.a /BDIR/software/installed/lib/.
chmod 0644 /BDIR/software/installed/lib/libatlas.a  /BDIR/software/installed/lib/liblapack.a \
                   /BDIR/software/installed/lib/libcblas.a
cp /BDIR/software/build-tmp/ATLAS/build/lib/libf77blas.a /BDIR/software/installed/lib/.
cp: cannot stat '/BDIR/software/build-tmp/ATLAS/build/lib/libf77blas.a': No such file or directory
make[2]: [Make.top:662: install_lib] Error 1 (ignored)
chmod 0644 /BDIR/software/installed/lib/libf77blas.a
chmod: cannot access '/BDIR/software/installed/lib/libf77blas.a': No such file or directory
make[2]: [Make.top:663: install_lib] Error 1 (ignored)
cp /BDIR/software/build-tmp/ATLAS/build/lib/libptcblas.a /BDIR/software/installed/lib/.
chmod 0644 /BDIR/software/installed/lib/libptcblas.a
cp /BDIR/software/build-tmp/ATLAS/build/lib/libptf77blas.a /BDIR/software/installed/lib/.
cp: cannot stat '/BDIR/software/build-tmp/ATLAS/build/lib/libptf77blas.a': No such file or directory
make[2]: [Make.top:666: install_lib] Error 1 (ignored)
chmod 0644 /BDIR/software/installed/lib/libptf77blas.a
chmod: cannot access '/BDIR/software/installed/lib/libptf77blas.a': No such file or directory
make[2]: [Make.top:667: install_lib] Error 1 (ignored)
cp /BDIR/software/build-tmp/ATLAS/build/lib/libsatlas.dylib /BDIR/software/installed/lib/.
cp: cannot stat '/BDIR/software/build-tmp/ATLAS/build/lib/libsatlas.dylib': No such file or directory
make[2]: [Make.top:668: install_lib] Error 1 (ignored)
cp /BDIR/software/build-tmp/ATLAS/build/lib/libtatlas.dylib /BDIR/software/installed/lib/.
cp: cannot stat '/BDIR/software/build-tmp/ATLAS/build/lib/libtatlas.dylib': No such file or directory
make[2]: [Make.top:669: install_lib] Error 1 (ignored)
cp /BDIR/software/build-tmp/ATLAS/build/lib/libsatlas.dll /BDIR/software/installed/lib/.
cp: cannot stat '/BDIR/software/build-tmp/ATLAS/build/lib/libsatlas.dll': No such file or directory
make[2]: [Make.top:670: install_lib] Error 1 (ignored)
cp /BDIR/software/build-tmp/ATLAS/build/lib/libtatlas.dll /BDIR/software/installed/lib/.
cp: cannot stat '/BDIR/software/build-tmp/ATLAS/build/lib/libtatlas.dll': No such file or directory
make[2]: [Make.top:671: install_lib] Error 1 (ignored)
cp /BDIR/software/build-tmp/ATLAS/build/lib/libsatlas.so /BDIR/software/installed/lib/.
cp: cannot stat '/BDIR/software/build-tmp/ATLAS/build/lib/libsatlas.so': No such file or directory
make[2]: [Make.top:672: install_lib] Error 1 (ignored)
cp /BDIR/software/build-tmp/ATLAS/build/lib/libtatlas.so /BDIR/software/installed/lib/.
cp: cannot stat '/BDIR/software/build-tmp/ATLAS/build/lib/libtatlas.so': No such file or directory
make[2]: [Make.top:673: install_lib] Error 1 (ignored)
make[2]: Leaving directory '/BDIR/software/build-tmp/ATLAS/build'
make[1]: Leaving directory '/BDIR/software/build-tmp/ATLAS/build'
make: Target 'all' not remade because of errors.


Mohammad Akhlaghi <makhlaghi>
Group administrator

 

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