taskReproducible paper template - Tasks: task #15430, Features to help with temporary...

 
 

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task #15430: Features to help with temporary files in shared memory

Submitted by:  Mohammad Akhlaghi <makhlaghi>
Submitted on:  Tue 29 Oct 2019 07:33:47 PM UTC  
 
Should Start On:  Tue 29 Oct 2019 12:00:00 AM UTC Should be Finished on:  Tue 29 Oct 2019 12:00:00 AM UTC
Category:  Analysis Priority:  5 - Normal
Status:  Postponed Privacy:  Public
Percent Complete:  0% Assigned to:  None
Open/Closed:  Open Effort:  0.00

Tue 29 Oct 2019 07:33:47 PM UTC, original submission:  

Recently in the "Tips for managing your project" of `README-hacking.md', an item (called "Fast access to temporary files", under "Make Programming") was added to help in dealing with large files and using shared memory to keep temporary files between rules.

We can facilitate this process with several low-level additions to the template. For example, automatically defining the suggested `shm-template' in the core of the template, or deleting all files with this pattern from RAM when the pipeline stops (even because of a failure).

We can also define functions (for example in the project's `.bashrc') to remove specified shared memory files automatically while preserving the order (deleting the non-suffix file after all the ones with a suffix).

Mohammad Akhlaghi <makhlaghi>
Project Administrator

 

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